It's very strongly implied that the scroll was written by the sleeping Zelda's father. Remember, the whole fiasco started because the prince did not inherit the complete Triforce from his father and was searching for the Triforce of Courage which his father had hidden from him.
It is implied though not stated. There are a few assumptions you are making.
1) The King was never quoted as hiding the ToC. It only says the Prince could not inherit the whole Triforce. This to me sounds more like his heart was unbalanced.
2) The King that gave the scroll to the Impa family is Sleeping Zelda's father. This is ALSO not stated.
If there were more proof that either of the above were true, then I would place definately place AoL backstory after aLttP, but as there isn't - it makes more sence to me for it being the first story. Saying something seems to be true doesn't make it canon so until further notice, this point is up for debate.
Um.... O.o how can all that go in that teenie little gap between OOT and TWW? Also, it implies heavily that FS and FSA have the same Link.
Thanks for pointing out they are the same Link. As I said before, I need to work on some of the GB games as I haven't played them all before. Once I get some more info, I will repost my theory.
aLttP → KnS = OoX → LA
I don't understand this part of your timeline at all, can you explain it?
Sure. After aLttP, KnS (or AST) happens, as does OoX (simultaneously). Then LA happens. I am thinkng of changing this however to the following.
aLttP → AST = LA | OoX
So aLttP, then AST and LA together, then a later Link doing OoX. This will counter the first meeting with Zelda problem, but makes the assumption that this new Link defeated Ganon, but never met the Princess. OK, I guess this explination sucks as well. Can any one get a translated quote from the Japanese Version please?
so is OOT your IW?
Yes.
In the GBA version of LttP there's a bonus dungeon called Palace of the Four Sword, suggesting that LttP takes place some time after the Four Sword games. Four Swords Adventures shows Ganon finding a trident, the only other games where he uses a trident are LttP, LA (when the Shadow nightmare takes his shape) and the Oracles. This also suggests that the Four Swords games take place before LttP.
Man, I really need more info on these games. Anyone willing to fill me in on all necessary info?
Wind Waker makes small references to Majora's Mask.
No it doesn't. Provide me a quote which can only apply to MM and we will see. Try not to add your own justification. I want just the quote.
You completely missed the part about the Triforce of Courage, which is WHY she was put to sleep in the first place.
It says that Zelda was told something by the King about the Triforce. It doesn't outright say that the Triforce was hidden and Zelda was given a scroll by the King. Reread the booklet.
You assemble the Four Sword and kill Dark Link.
Could someone shed some more light on this dugeon. Any important screen shots would also be much appreciated.
Thanks for the feedback thus far guys. Once I get some more responces, I can hopefully compile Version 2

Mohammed Ali